Tsukuba Bioinfo Assembly
From April 2022, TBA will be held every other Tuesday from 12:00 to 12:45 via zoom
2022年4月からは隔週火曜日12:00~12:45の間でzoomでの開催となります！
Upcoming meetings AY2022
| Date | Presenter | Topic |
|---|---|---|
| 2022/04/12 | Haruka Ozaki (Univ. Tsukuba) | Welcome to TBA & Review of Bioinformatics 2021 |
| 2022/04/26 | Sayaka Suzuki (Univ. Tsukuba) | Tips for succeeding in PhD program |
| 2022/05/10 | Shoi Shi (Univ. Tsukuba) | Sleep meets data science |
| 2022/05/24 | Hirofumi Aso (Univ. Tokyo) | Git and GitHub |
| 2022/06/07 | Corrine Schwier (Univ. Tsukuba) | Ways that data science can be used to improve patient care |
| 2022/06/14 | Akihiro Kuno (Univ. Tsukuba) | Lovely environment management with conda and mamba🥰 (condaとmambaで快適！環境構築🥰) |
| 2022/07/05 | Hirofumi Kariyayama (Univ. Tsukuba) | Journal club: Systematic reconstruction of cellular trajectories across mouse embryogenesis |
| 2022/07/19 | Kazuya Miyanishi (Univ. Tsukuba) | Temporal dynamics of microglia in Alzheimer’s disease model mice using single-cell RNA sequence |
| 2022/10/25 | Haruka Ozaki (Univ. Tsukuba) | Welcome to TBA (Fall) & Introduction to Visual Studio Code |
| 2022/11/08 | Akihiro Kuno (Univ. Tsukuba) | Handy web scraping with Shell Script🍰 |
| 2022/11/22 | Ryosuke Matsuzawa (Univ. Tsukuba) | My experience on R Packaging and Bioconductor |
| 2022/12/20 | Kazuya Miyanishi (Univ. Tsukuba) | Look-back on my first oversea conference & lab visit |
| 2023/01/10 | TBA staff & You! | New Year’s Resolutions & Share your issues on bioinformatics and research |
| 2023/01/24 | TBA staff & You | Resources (books, websites, videos etc…) you are loving in😍 |
| 2023/02/07 | Akihiro Kuno (Univ. Tsukuba) | To be announced |
| 2023/02/14 (16:00) | Sayaka Suzuki (Karolinska Institutet) | Cross the Borders in Research ~ Informatics meets Immunology~ |
What is Tsukuba Bioinfo Assembly?
What we aim
A laboratory is a community of people working together with a common interest in a particular field. In contrast, bioinformatics, AI, machine learning, programming, etc. have become fundamental to almost all labs. We organize beyond-lab community to bring opportunities of training and discussion of these topics to students/researchers.
ラボ＝研究室は、共通の関心を持って特定の分野に取り組む人々のコミュニティです。それに対して、バイオインフォマティクス、AI、機械学習、プログラミングなどは、ほとんどすべての研究室にとって重要なものとなっています。私たちはラボを越えたコミュニティとして、学生や研究者にこれらのトピックに取り組む機会を提供することを目指しています。
What we do
Meeting
- Tutorial (hands-on) チュートリアル（ハンズオン）
- Paper review (Jounral club) 論文レビュー
- Research proposal/progress 研究提案・進捗報告
- Seminar セミナー
Slack
- Communications コミュニケーション
- Information exchange 情報交換
- Troubleshootings トラブルシューティング
Who can join
Anyone can join this meeting!
誰でも参加できます！
How to join?
Please use the Google Form to automatically get an invitation to our Discord!
Google Form から登録すると Discord への招待が自動的に送られます。
Past events
Offline meeting before COVID-19 era
Support or Contact
- Haruka Ozaki
- Akihiro Kuno
- Hirofumi Aso
- Kazuya Miyanishi
- Sayaka Suzuki
- Contact: tsukuba-bioinfo-assembly#googlegroups.com (Replace # with @)
Previous meetings
AY2021
| Date | Presenter | Topic |
|---|---|---|
| 2021/04/15 | Haruka Ozaki (Univ. Tsukuba) | New Fiscal Year Party (kick-off) |
| 2021/04/22 | Sayaka Suzuki & Haruka Ozaki (Univ. Tsukuba) | Tips for bioinformatics |
| 2021/05/ |
Akihiro Kuno (Univ. Tsukuba) | “How to learn programming” |
| 2021/05/20 | Kozo Nishida (RIKEN) | Introducing Bioconductor and its community |
| 2021/06/03 | Haruka Ozaki (Univ. Tsukuba) | Awesome tidyverse!! (hands-on) |
| 2021/06/17 | Hirofumi Aso (Univ. Tokyo) Akira Iguchi (AIST) |
“Single-cell analysis of immune responses to viral infection” “Multi-omics analysis of the coral Acropora digitifera colonies with different heat stress tolerances” |
| 2021/07/01 | Yumi Kanemaru (ex Univ. Tsukuba) Kazumasa Kanemaru (Sanger Institute) |
“Multi-layer biology: wet/dry, mice/humans, and Japan/UK” “scRNA-seq analysis of T cells in graft-versus-host disease” |
| 2021/07/15 | Masa-aki Yoshida (Univ. Shimane) Masayo Nomoto (Univ. Tokyo) |
“Independent adoptions of proteins found in the mineralized shell-like eggcase of Argonaut octopuses” “My struggles; from de novo transcriptome assembly to analysis of deferentially expressed mRNA for non-model species “stingray”” |
| 2021/09/09 | Kotaro Sakamoto (ISM) | Jounal club: “Poincaré maps: Hyperbolic embeddings to understand how cells develop” |
| 2021/09/30 | Yu-Hsien Lin (Piao-Piao) (Univ. Tsukuba) | 1. Selective suppression of oral allergen-induced anaphylaxis by Allergin-1 on basophils in mice 2. Microbiota and intestinal barrier function. |
| 2021/10/07 | Akihiro Kuno (Univ. Tsukuba) | Share all the joys and sorrows of software development |
| 2021/10/21 10:30-12:00 |
Alexis Vandenbon (Kyoto University) | singleCellHaystack: A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data |
| 2021/11/04 | Tazro OHTA (DBCLS, ROIS) | Learn what and when to learn: skills for bioinformatics as open science |
| 2021/11/18 | Sayaka Suzuki (Univ. Tsukuba) | Cell-to-cell interaction analysis of prognostic ligand-receptor pairs in human pancreatic ductal adenocarcinoma |
| 2021/12/02 | Akihiro Kuno (Univ. Tsukuba) | [Hands-on] Programming 101 ~ if statement and for loop ~ |
| — | Canceled | |
| 2022/01/13 | Josephine Galipon (Keio Univ.) | Advanced Nomadic Open Bioscience |
| — | Canceled | |
| 2022/02/10 | Jun Seita (RIKEN) | Each gene has a different dynamic-range of its expression. |
Postponed to 3/10 |
||
| 2022/03/10 | Sayaka SUzuki (Univ. Tsukuba) | [Tutorial] How to use ICGC tada portal for cancer research |